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Balík: proteinortho (6.0.14+dfsg-1)

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Ostatné balíky súvisiace s balíkom proteinortho

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  • odporúča
  • navrhuje
  • dep: diamond-aligner
    accelerated BLAST compatible local sequence aligner
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: liblapack3
    Library of linear algebra routines 3 - shared version
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: procps
    /proc file system utilities
  • dep: python3
    interactive high-level object-oriented language (default python3 version)

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amd64 202.6 kB790 kB [zoznam súborov]