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Balík: smalt (0.7.6-7)

Odkazy pre smalt

smalt

Zdroje Trisquel:

Stiahnuť zdrojový balík smalt:

Správca:

Original Maintainers:

  • Debian Med Packaging Team (Konferencia)
  • Andreas Tille

Externé zdroje:

Podobné balíky:

Sequence Mapping and Alignment Tool

SMALT efficiently aligns DNA sequencing reads with a reference genome. Reads from a wide range of sequencing platforms, for example Illumina, Roche-454, Ion Torrent, PacBio or ABI-Sanger, can be processed including paired reads.

The software employs a perfect hash index of short words (< 20 nucleotides long), sampled at equidistant steps along the genomic reference sequences.

For each read, potentially matching segments in the reference are identified from seed matches in the index and subsequently aligned with the read using a banded Smith-Waterman algorithm.

The best gapped alignments of each read is reported including a score for the reliability of the best mapping. The user can adjust the trade-off between sensitivity and speed by tuning the length and spacing of the hashed words.

A mode for the detection of split (chimeric) reads is provided. Multi-threaded program execution is supported.

Ostatné balíky súvisiace s balíkom smalt

  • závisí
  • odporúča
  • navrhuje
  • dep: libbambamc0
    Runtime library for reading and writing BAM (genome alignment) files
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: zlib1g (>= 1:1.2.0.2)
    compression library - runtime

Stiahnuť smalt

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 110.5 kB289 kB [zoznam súborov]
i386 123.4 kB328 kB [zoznam súborov]