Balík: ivar (1.3.1+dfsg-4)

Odkazy pre ivar

Zdroje Trisquel:

Stiahnuť zdrojový balík ivar:

Správca:

Debian Med Packaging Team (Konferencia)

Original Maintainers:

Debian Med Packaging Team (Konferencia)
Andreas Tille
Étienne Mollier

Externé zdroje:

Domovská stránka [github.com]

Podobné balíky:

functions broadly useful for viral amplicon-based sequencing

iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing. Additional tools for metagenomic sequencing are actively being incorporated into iVar. While each of these functions can be accomplished using existing tools, iVar contains an intersection of functionality from multiple tools that are required to call iSNVs and consensus sequences from viral sequencing data across multiple replicates. iVar provided the following functions:

 1. trimming of primers and low-quality bases,
 2. consensus calling,
 3. variant calling - both iSNVs and insertions/deletions, and
 4. identifying mismatches to primer sequences and excluding the
    corresponding reads from alignment files.

Ostatné balíky súvisiace s balíkom ivar

závisí

odporúča

navrhuje

dep: libc6 (>= 2.34)

GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
dep: libgcc-s1 (>= 3.3.1)

GCC support library
dep: libhts3 (>= 1.10)

C library for high-throughput sequencing data formats
dep: libstdc++6 (>= 11)

GNU Standard C++ Library v3

rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats

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Architektúra	Veľkosť balíka	Nainštalovaná veľkosť	Súbory
amd64	201.2 kB	1407 kB	[zoznam súborov]
arm64	194.4 kB	1363 kB	[zoznam súborov]

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