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Balík: hisat2 (2.2.1-3)

Odkazy pre hisat2

hisat2

Zdroje Trisquel:

Stiahnuť zdrojový balík hisat2:

Správca:

Original Maintainers:

  • Debian Med Packaging Team (Konferencia)
  • Michael R. Crusoe

Externé zdroje:

Podobné balíky:

graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

Ostatné balíky súvisiace s balíkom hisat2

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [nie armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • rec: bcftools
    genomic variant calling and manipulation of VCF/BCF files
  • rec: python3-hisat2
    Python scripts accompanying hisat2
  • rec: samtools
    processing sequence alignments in SAM, BAM and CRAM formats

Stiahnuť hisat2

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
amd64 3,742.3 kB12081 kB [zoznam súborov]
arm64 3,940.2 kB11305 kB [zoznam súborov]
armhf 3,996.4 kB11485 kB [zoznam súborov]
ppc64el 4,149.5 kB12233 kB [zoznam súborov]