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[ Zdroj: discosnp ]
Balík: discosnp (1:2.6.2-1)
Odkazy pre discosnp
Zdroje Trisquel:
Stiahnuť zdrojový balík discosnp:
Správca:
Original Maintainers:
- Debian Med Packaging Team (Konferencia)
- Olivier Sallou
- Andreas Tille
Externé zdroje:
- Domovská stránka [colibread.inria.fr]
Podobné balíky:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Ostatné balíky súvisiace s balíkom discosnp
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- dep: gatb-core
- Genome Analysis Toolbox with de-Bruijn graph
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
tiež virtuálny balík poskytovaný balíkom libc6-udeb
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- dep: libgatbcore3 (>= 1.4.2) [amd64]
- dynamic library of the Genome Analysis Toolbox
- dep: libgatbcore3 (>= 1.4.2+dfsg) [nie amd64]
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libhdf5-103-1
- HDF5 C runtime files - serial version
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.2.6)
- compression library - runtime
Stiahnuť discosnp
| Architektúra | Veľkosť balíka | Nainštalovaná veľkosť | Súbory |
|---|---|---|---|
| amd64 | 1,414.6 kB | 2617 kB | [zoznam súborov] |
| arm64 | 1,408.8 kB | 2569 kB | [zoznam súborov] |
| ppc64el | 1,444.1 kB | 2925 kB | [zoznam súborov] |