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Balík: python3-vcf (0.6.8+git20170215.476169c-8build1)

Variant Call Format (VCF) parser for Python 3

The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project.

The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings.

This package provides the Python 3 modules.

Ostatné balíky súvisiace s balíkom python3-vcf

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.17) [arm64, ppc64el]
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
    dep: libc6 (>= 2.4) [amd64, armhf]
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)

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amd64 42.5 kB154 kB [zoznam súborov]
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armhf 40.0 kB128 kB [zoznam súborov]
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