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Balík: python3-biom-format (2.1.10-3ubuntu1)

Biological Observation Matrix (BIOM) format (Python 3)

The BIOM file format (canonically pronounced biome) is designed to be a general-use format for representing biological sample by observation contingency tables. BIOM is a recognized standard for the Earth Microbiome Project and is a Genomics Standards Consortium candidate project.

The BIOM format is designed for general use in broad areas of comparative -omics. For example, in marker-gene surveys, the primary use of this format is to represent OTU tables: the observations in this case are OTUs and the matrix contains counts corresponding to the number of times each OTU is observed in each sample. With respect to metagenome data, this format would be used to represent metagenome tables: the observations in this case might correspond to SEED subsystems, and the matrix would contain counts corresponding to the number of times each subsystem is observed in each metagenome. Similarly, with respect to genome data, this format may be used to represent a set of genomes: the observations in this case again might correspond to SEED subsystems, and the counts would correspond to the number of times each subsystem is observed in each genome.

This package provides the BIOM format library for the Python 3 interpreter.

Ostatné balíky súvisiace s balíkom python3-biom-format

  • závisí
  • odporúča
  • navrhuje
  • dep: cython3
    C-Extensions for Python 3
  • dep: libc6 (>= 2.17) [arm64, ppc64el]
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
    dep: libc6 (>= 2.4) [amd64, armhf]
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-h5py
    general-purpose Python interface to hdf5
  • dep: python3-h5py-serial
    general-purpose Python interface to hdf5 (Python 3 serial)
  • dep: python3-numpy (>= 1:1.20.0)
    Fast array facility to the Python 3 language
  • dep: python3-numpy-abi9
    virtuálny balík poskytovaný balíkom python3-numpy
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-scipy
    scientific tools for Python 3

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amd64 122.2 kB731 kB [zoznam súborov]
arm64 119.2 kB703 kB [zoznam súborov]
armhf 116.6 kB649 kB [zoznam súborov]
ppc64el 127.4 kB867 kB [zoznam súborov]