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Balík: umis (1.0.8-1build1)

tools for processing UMI RNA-tag data

Umis provides tools for estimating expression in RNA-Seq data which performs sequencing of end tags of transcript, and incorporate molecular tags to correct for amplification bias.

There are four steps in this process. 

 1. Formatting reads
 2. Filtering noisy cellular barcodes
 3. Pseudo-mapping to cDNAs
 4. Counting molecular identifiers

Ostatné balíky súvisiace s balíkom umis

  • závisí
  • odporúča
  • navrhuje
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    tiež virtuálny balík poskytovaný balíkom libc6-udeb
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-click
    Wrapper around optparse for command line utilities - Python 3.x
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • dep: python3-regex
    alternative regular expression module (Python 3)
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-toolz
    List processing tools and functional utilities
  • sug: umis-examples
    tools for processing UMI RNA-tag data (examples)

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amd64 24.9 kB110 kB [zoznam súborov]