Balík: garlic-doc (1.6-1.1)

[Chemistry] a molecular visualization program - documents

This is the documentation package for Garlic.

Garlic is probably the most portable molecular visualization program in the Unix world. It's written for the investigation of membrane proteins. It may be used to visualize other proteins, as well as some geometric objects. The name should has something to do with the structure and operation of this program. This version of garlic recognizes PDB format version 2.1. Garlic may also be used to analyze protein sequences.

Features include (but not limited to):

 o The slab position and thickness are visible in a small window.
 o Atomic bonds as well as atoms are treated as independent drawable
   objects.
 o The atomic and bond colors depend on position. Five mapping modes
   are available (as for slab).
 o Capable to display stereo image.
 o Capable to display other geometric objects, like membrane.
 o Atomic information is available for atom covered by the mouse
   pointer. No click required, just move the mouse pointer over the
   structure!
 o Capable to load more than one structure.
 o Capable to draw Ramachandran plot, helical wheel, Venn diagram,
   averaged hydrophobicity and hydrophobic moment plot.
 o The command prompt is available at the bottom of the main window.
   It is able to display one error message and one command string.