Skip to content
Sections
>> Trisquel >> Balíky >> aramo >> science >> abacas
etiona  ] [  nabia  ] [  aramo  ]
[ Zdroj: abacas  ]

Balík: abacas (1.3.1-9)

Odkazy pre abacas

abacas

Zdroje Trisquel:

Stiahnuť zdrojový balík abacas:

Správca:

Original Maintainers:

  • Debian Med Packaging Team (Konferencia)
  • Andreas Tille
  • Nilesh Patra

Externé zdroje:

Podobné balíky:

close gaps in genomic alignments from short reads

ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences) intends to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.

ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparison file that can be used to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with other contigs can also be visualized by loading the outputted feature file on ACT.

Ostatné balíky súvisiace s balíkom abacas

  • závisí
  • odporúča
  • navrhuje
  • dep: mummer
    Efficient sequence alignment of full genomes
  • rec: primer3
    tool to design flanking oligo nucleotides for DNA amplification
  • sug: abacas-examples
    sample data for abacas to close gaps in genomic alignments

Stiahnuť abacas

Stiahnuť pre všetky dostupné architektúry
Architektúra Veľkosť balíka Nainštalovaná veľkosť Súbory
all 24.1 kB109 kB [zoznam súborov]