Пакет: jellyfish1 (1.1.11-6)
Ссылки для jellyfish1
Ресурсы Trisquel:
Исходный код jellyfish1:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Shaun Jackman
- Andreas Tille
Внешние ресурсы:
- Сайт [www.cbcb.umd.edu]
Подобные пакеты:
count k-mers in DNA sequences
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This is the latest version of the 1.x series of jellyfish which is used by some other applications that are not compatible with version 2.x which is provided inside the jellyfish package.
Другие пакеты, относящиеся к jellyfish1
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- dep: libc6 (>= 2.34)
- GNU C Library: Shared libraries
также виртуальный пакет, предоставляемый libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [не armhf]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- enh: kraken
- assigning taxonomic labels to short DNA sequences
Загрузка jellyfish1
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| amd64 | 161,8 Кб | 592 Кб | [список файлов] |
| arm64 | 158,9 Кб | 560 Кб | [список файлов] |
| armhf | 184,0 Кб | 531 Кб | [список файлов] |
| ppc64el | 172,3 Кб | 684 Кб | [список файлов] |