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Пакет: r-bioc-limma (3.50.0+dfsg-1)

Ссылки для r-bioc-limma

r-bioc-limma

Ресурсы Trisquel:

Исходный код r-bioc-limma:

Сопровождающий:

Original Maintainers:

  • Debian R Packages Maintainers
  • Andreas Tille
  • Kevin Murray
  • Steffen Moeller

Внешние ресурсы:

Подобные пакеты:

linear models for microarray data

Microarrays are microscopic plates with carefully arranged short DNA strands and/or chemically prepared surfaces to which other DNA preferably binds. The amount of DNA binding at different locations of these chips, typically determined by a fluorescent dye, is to be interpreted. The technology is typically used with DNA that is derived from RNA, i.e to determine the activity of a gene and/or its splice variants. But the technology is also used to determine sequence variations in genomic DNA.

This Bioconductor package supports the analysis of gene expression microarray data, especially the use of linear models for analysing designed experiments and the assessment of differential expression. The package includes pre-processing capabilities for two-colour spotted arrays. The differential expression methods apply to all array platforms and treat Affymetrix, single channel and two channel experiments in a unified way.

Другие пакеты, относящиеся к r-bioc-limma

  • зависимости
  • рекомендации
  • предложения
  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    также виртуальный пакет, предоставляемый libc6-udeb
  • dep: r-api-4.0
    виртуальный пакет, предоставляемый r-base-core
  • dep: r-api-bioc-3.14
    виртуальный пакет, предоставляемый r-bioc-biocgenerics
  • dep: r-base-core (>= 4.1.2-1ubuntu1)
    GNU R core of statistical computation and graphics system
  • rec: r-bioc-go.db
    annotation maps describing the entire Gene Ontology
  • rec: r-bioc-org.hs.eg.db
    genome-wide annotation for Human
  • rec: r-cran-locfit
    GNU R local regression, likelihood and density estimation
  • rec: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • rec: r-cran-statmod (>= 1.2.2)
    GNU R package providing algorithms and functions for statistical modeling
  • sug: r-bioc-affy
    BioConductor methods for Affymetrix Oligonucleotide Arrays
  • sug: r-bioc-annotationdbi
    GNU R Annotation Database Interface for BioConductor
  • sug: r-bioc-biobase
    base functions for Bioconductor
  • sug: r-cran-biasedurn
    GNU R Biased Urn model distributions
  • sug: r-cran-ellipse
    GNU R functions for drawing ellipses and ellipse-like confidence regions
  • sug: r-cran-gplots
    GNU R package with tools for plotting data by Greg Warnes et al

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