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[ Источник: optimir ]
Пакет: optimir (1.1-1)
Ссылки для optimir
Ресурсы Trisquel:
Исходный код optimir:
Сопровождающий:
Original Maintainers:
- Debian Med Packaging Team (Почтовый архив)
- Dylan Aïssi
Внешние ресурсы:
- Сайт [github.com]
Подобные пакеты:
Integrating genetic variations in miRNA alignment
OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression.
OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression.
Другие пакеты, относящиеся к optimir
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- dep: bowtie2
- ultrafast memory-efficient short read aligner
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- dep: cutadapt
- Clean biological sequences from high-throughput sequencing reads
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-biopython
- Python3 library for bioinformatics
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- rec: r-cran-ggplot2
- implementation of the Grammar of Graphics
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- rec: r-cran-gridextra
- GNU R package with extensions for the grid package
Загрузка optimir
| Архитектура | Размер пакета | В установленном виде | Файлы |
|---|---|---|---|
| all | 1 100,5 Кб | 7402 Кб | [список файлов] |