[ Pakiet źródłowy: sga ]
Pakiet: sga (0.10.15-5build1)
Odnośniki dla sga
Zasoby systemu Trisquel:
- Install using apturl
- Entry at directory.fsf.org
- Raporty o błędach
- Changelog
- Informacje nt. praw autorskich
Pobieranie pakietu źródłowego sga:
Opiekun:
Original Maintainers:
- Debian Med Packaging Team (Archiwum e-mail)
- Michael R. Crusoe
- Andreas Tille
Zasoby zewnętrzne:
- Strona internetowa [github.com]
Podobne pakiety:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Inne pakiety związane z sga
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- dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
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- dep: libgcc-s1 (>= 3.0) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
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- dep: python3-ruffus
- Python3 computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM, BAM and CRAM formats
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: abyss (>= 2.0.2-1)
- Pakiet niedostępny
Pobieranie sga
| Architektura | Rozmiar pakietu | Rozmiar po instalacji | Pliki |
|---|---|---|---|
| amd64 | 817,9 KiB | 2479 KiB | [lista plików] |
| armhf | 604,2 KiB | 1258 KiB | [lista plików] |