Pakiet: profbval (1.0.22-6)

Odnośniki dla profbval

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego profbval:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Laszlo Kajan
Christof Angermüller
Andreas Tille

Zasoby zewnętrzne:

Strona internetowa [www.rostlab.org]

Podobne pakiety:

predictor of flexible/rigid protein residues from sequence

PROFbval can be useful for both protein structure and function predictions. For instance, a biologist can locate potentially antigenic determinants by identifying the most flexible residues on the protein surface. Additionally, a crystallographer can locate residues that potentially have high experimental B-values.

PROFbval takes the following input, further described on profbval(1):

 * a protein sequence in a FASTA file
 * secondary structure and solvent accessibility prediction by prof(1)
 * an HSSP file

Background: the mobility of a given residue on the protein surface is related to its functional role. Therefore, identification of extremely rigid or flexible residues on the protein surface is helpful for identifying functionally important residues in proteins. A common measure of atom mobility in proteins is B-value data from x-ray crystallography structures. PROFbval is the first tool to predict normalized backbone B-values from amino-acid sequence.

Inne pakiety związane z profbval

wymaga

poleca

sugeruje

dep: perl

Larry Wall's Practical Extraction and Report Language
dep: profnet-bval

neural network architecture for profbval

rec: blast2

transitional dummy package to ncbi-blast+-legacy
rec: librg-utils-perl

parsers and format conversion utilities used by (e.g.) profphd
rec: profphd

Pakiet niedostępny

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Pobieranie profbval

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