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[ Pakiet źródłowy: iqtree  ]

Pakiet: iqtree (1.6.12+dfsg-1build1)

efficient phylogenetic software by maximum likelihood

IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: 

 * A novel fast and effective stochastic algorithm to estimate maximum
   likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
   of likelihood while requiring similar amount of computing time (see
   Nguyen et al., 2015)
 * An ultrafast bootstrap approximation to assess branch supports (see
   Minh et al., 2013).
 * A wide range of substitution models for binary, DNA, protein, codon,
   and morphological alignments.
 * Ultrafast model selection for all data types, 10 to 100 times faster
   than jModelTest and ProtTest.
 * Finding best partition scheme like PartitionFinder.
 * Partitioned models with mixed data types for phylogenomic (multi-
   gene) alignments, allowing for separate, proportional, or joint
   branch lengths among genes.
 * Supporting the phylogenetic likelihod library (PLL) (see Flouri et
   al., 2014)

Inne pakiety związane z iqtree

  • wymaga
  • poleca
  • sugeruje
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc-s1 (>= 4.0)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libopenmpi3 (>= 4.0.3~rc4)
    high performance message passing library -- shared library
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Pobieranie iqtree

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