Pakiet: mapsembler2 (2.2.4+dfsg-3build2)

Odnośniki dla mapsembler2

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego mapsembler2:

Opiekun:

Debian Med Packaging Team (Archiwum e-mail)

Original Maintainers:

Debian Med Packaging Team (Archiwum e-mail)
Olivier Sallou
Andreas Tille

Zasoby zewnętrzne:

Strona internetowa [colibread.inria.fr]

Podobne pakiety:

bioinformatics targeted assembly software

Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).

It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.

Mapsembler2 may be used for (not limited to):

 - Validate an assembled sequence (input as starter), e.g. from a de
   Bruijn graph assembly where read-coherence was not enforced.
 - Checks if a gene (input as starter) has an homolog in a set of reads
 - Checks if a known enzyme is present in a metagenomic NGS read set.
 - Enrich unmappable reads by extending them, possibly making them mappable
 - Checks what happens at the extremities of a contig
 - Remove contaminants or symbiont reads from a read set

Inne pakiety związane z mapsembler2

wymaga

poleca

sugeruje

dep: bc

GNU bc arbitrary precision calculator language
dep: libc6 (>= 2.29)

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb
dep: libgcc-s1 (>= 3.5)

GCC support library
dep: libgomp1 (>= 4.9)

GCC OpenMP (GOMP) support library
dep: libstdc++6 (>= 5.2)

GNU Standard C++ Library v3
dep: zlib1g (>= 1:1.2.3.4)

compression library - runtime

Pobieranie mapsembler2

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
armhf	206,4 KiB	487 KiB	[lista plików]

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