Pakiet: r-cran-alakazam (1.2.0-1)

Odnośniki dla r-cran-alakazam

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego r-cran-alakazam:

Opiekun:

Debian R Packages Maintainers

Original Maintainers:

Debian R Packages Maintainers
Steffen Moeller

Zasoby zewnętrzne:

Strona internetowa [cran.r-project.org]

Podobne pakiety:

Immunoglobulin Clonal Lineage and Diversity Analysis

Alakazam is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq) and provides a set of tools to investigate lymphocyte receptor clonal lineages, diversity, gene usage, and other repertoire level properties, with a focus on high-throughput immunoglobulin (Ig) sequencing.

Alakazam serves five main purposes:

 * Providing core functionality for other R packages in the Immcantation
   framework. This includes common tasks such as file I/O, basic DNA
   sequence manipulation, and interacting with V(D)J segment and gene
   annotations.
 * Providing an R interface for interacting with the output of the
   pRESTO and Change-O tool suites.
 * Performing lineage reconstruction on clonal populations of Ig
   sequences and analyzing the topology of the resultant lineage trees.
 * Performing clonal abundance and diversity analysis on lymphocyte
   repertoires.
 * Performing physicochemical property analyses of lymphocyte receptor
   sequences.

Inne pakiety związane z r-cran-alakazam

wymaga

poleca

sugeruje

dep: libc6 (>= 2.14) [amd64]

GNU C Library: Shared libraries
również pakiet wirtualny udostępniany przez libc6-udeb

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.4) [armhf]
dep: libgcc-s1 (>= 3.3.1) [nie armhf]

GCC support library

dep: libgcc-s1 (>= 3.5) [armhf]
dep: libstdc++6 (>= 5.2) [armhf]

GNU Standard C++ Library v3

dep: libstdc++6 (>= 9) [nie armhf]
dep: r-api-4.0

pakiet wirtualny udostępniany przez r-base-core
dep: r-base-core (>= 4.1.2-1)

GNU R core of statistical computation and graphics system
dep: r-bioc-biostrings (>= 2.56.0)

GNU R string objects representing biological sequences
dep: r-bioc-genomicalignments (>= 1.24.0)

BioConductor representation and manipulation of short genomic alignments
dep: r-bioc-iranges (>= 2.22.2)

GNU R low-level containers for storing sets of integer ranges
dep: r-cran-airr (>= 1.3)

GNU R AIRR data representation reference library
dep: r-cran-ape

GNU R package for Analyses of Phylogenetics and Evolution
dep: r-cran-dplyr (>= 1.0)

GNU R grammar of data manipulation
dep: r-cran-ggplot2 (>= 3.3.4)

implementation of the Grammar of Graphics
dep: r-cran-igraph (>= 1.0)

GNU R network analysis and visualization
dep: r-cran-matrix

GNU R package of classes for dense and sparse matrices
dep: r-cran-progress

GNU R terminal progress bars
dep: r-cran-rcpp (>= 0.12.12)

GNU R package for Seamless R and C++ Integration
dep: r-cran-readr

GNU R package to read rectangular text data
dep: r-cran-rlang

Functions for Base Types and Core R and 'Tidyverse' Features
dep: r-cran-scales

Scale functions for visualization
dep: r-cran-seqinr

GNU R biological sequences retrieval and analysis
dep: r-cran-stringi

GNU R character string processing facilities
dep: r-cran-tibble

GNU R Simple Data Frames
dep: r-cran-tidyr (>= 1.0)

GNU R package to easily tidy data

sug: r-cran-knitr

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-rmarkdown

convert R markdown documents into a variety of formats
sug: r-cran-testthat

GNU R testsuite

Pobieranie r-cran-alakazam

Pobierz dla wszystkich dostępnych architektur
Architektura	Rozmiar pakietu	Rozmiar po instalacji	Pliki
amd64	2 328,9 KiB	2774 KiB	[lista plików]
arm64	2 326,5 KiB	2761 KiB	[lista plików]
armhf	2 333,7 KiB	2753 KiB	[lista plików]
ppc64el	2 333,5 KiB	2805 KiB	[lista plików]

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