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[ Pakiet źródłowy: last-align  ]

Pakiet: last-align (1260-1)

Odnośniki dla last-align

last-align

Zasoby systemu Trisquel:

Pobieranie pakietu źródłowego last-align:

Opiekun:

Original Maintainers:

  • Debian Med Packaging Team (Archiwum e-mail)
  • Charles Plessy
  • Andreas Tille
  • Nilesh Patra

Zasoby zewnętrzne:

Podobne pakiety:

genome-scale comparison of biological sequences

LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at: 

 * Comparing large (e.g. mammalian) genomes.
 * Mapping lots of sequence tags onto a genome.

The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.

Inne pakiety związane z last-align

  • wymaga
  • poleca
  • sugeruje
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    również pakiet wirtualny udostępniany przez libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [arm64, ppc64el]
    GCC support library
    dep: libgcc-s1 (>= 3.3.1) [amd64]
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: parallel
    build and execute command lines from standard input in parallel
  • rec: python3-pil
    Python Imaging Library (Python3)

Pobieranie last-align

Pobierz dla wszystkich dostępnych architektur
Architektura Rozmiar pakietu Rozmiar po instalacji Pliki
amd64 1 901,2 KiB18255 KiB [lista plików]
arm64 791,1 KiB3364 KiB [lista plików]
armhf 742,2 KiB2556 KiB [lista plików]
ppc64el 862,0 KiB4484 KiB [lista plików]