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Pakket: r-cran-bio3d (2.4-1-1build1)

GNU R package for biological structure analysis

The bio3d package contains utilities to process, organize and explore protein structure, sequence and dynamics data. Features include the ability to read and write structure, sequence and dynamic trajectory data, perform atom summaries, atom selection, re-orientation, superposition, rigid core identification, clustering, torsion analysis, distance matrix analysis, structure and sequence conservation analysis, and principal component analysis (PCA). In addition, various utility functions are provided to enable the statistical and graphical power of the R environment to work with biological sequence and structural data.

Andere aan r-cran-bio3d gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    virtueel pakket geboden door r-base-core
  • dep: r-base-core (>= 3.6.2.20200221-1build1)
    GNU R core of statistical computation and graphics system
  • dep: r-cran-rcpp
    GNU R package for Seamless R and C++ Integration
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: clustalo
    General purpose multiple sequence alignment program for proteins
  • rec: dssp
    protein secondary structure assignment based on 3D structure
  • rec: muscle
    Multiple alignment program of protein sequences
  • rec: mustang
    multiple structural alignment of proteins
  • rec: r-cran-testthat (>= 0.9.1)
    GNU R testsuite
  • sug: r-bioc-biostrings
    GNU R string objects representing biological sequences
  • sug: r-cran-bigmemory
    Manage Massive Matrices with Shared Memory and Memory-Mapped Files
  • sug: r-cran-httr
    GNU R tools for working with URLs and HTTP
  • sug: r-cran-igraph
    GNU R network analysis and visualization
  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming
  • sug: r-cran-lattice
    GNU R package for 'Trellis' graphics
  • sug: r-cran-ncdf4
    GNU R interface to Unidata netCDF format data files
  • sug: r-cran-rcurl
    GNU R General network (HTTP/FTP/...) client interface
  • sug: r-cran-xml
    GNU R package for XML parsing and generation

r-cran-bio3d downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 2.847,7 kB3915 kB [overzicht]
armhf 2.838,2 kB3826 kB [overzicht]