Skip to content
Sections
>> Trisquel >> Pakketten >> nabia >> science >> assemblytics
etiona  ] [  nabia  ] [  aramo  ]
[ Bron: assemblytics  ]

Pakket: assemblytics (1.0+ds-2)

detect and analyze structural variants from a genome assembly

Assemblytics incorporates a unique anchor filtering approach to increase robustness to repetitive elements, and identifies six classes of variants based on their distinct alignment signatures. Assemblytics can be applied both to comparing aberrant genomes, such as human cancers, to a reference, or to identify differences between related species.

Andere aan assemblytics gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-plyr
    tools for splitting, applying and combining data
  • dep: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • rec: mummer
    Efficient sequence alignment of full genomes

assemblytics downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
all 18,6 kB88 kB [overzicht]