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Pakket: tabix (1.10.2-3ubuntu0.1)

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This version of tabix is built from the HTSlib source.

Andere aan tabix gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libcurl3-gnutls (>= 7.18.0)
    easy-to-use client-side URL transfer library (GnuTLS flavour)
  • dep: libdeflate0 (>= 1.0)
    fast, whole-buffer DEFLATE-based compression and decompression
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
    XZ-format compression library
  • dep: libssl1.1 (>= 1.1.0)
    Secure Sockets Layer toolkit - shared libraries
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

tabix downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 354,4 kB1304 kB [overzicht]
armhf 315,5 kB853 kB [overzicht]