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Pakket: stacks (2.0Beta8c+dfsg-1)

Verwijzigingen voor stacks

stacks

Trisquel bronnen:

Het bronpakket stacks downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Tim Booth
  • Andreas Tille

Externe bronnen:

Vergelijkbare pakketten:

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Andere aan stacks gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.17)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libdbi-perl
    Perl Database Interface (DBI)
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libhts2 (>= 1.0)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

stacks downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 932,4 kB5146 kB [overzicht]
i386 987,3 kB5333 kB [overzicht]