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Pakket: smrtanalysis (0~20161126)

software suite for single molecule, real-time sequencing

SMRT® Analysis is a powerful, open-source bioinformatics software suite available for analysis of DNA sequencing data from Pacific Biosciences’ SMRT technology. Users can choose from a variety of analysis protocols that utilize PacBio® and third-party tools. Analysis protocols include de novo genome assembly, cDNA mapping, DNA base-modification detection, and long-amplicon analysis to determine phased consensus sequences.

This is a metapackage that depends on the components of SMRT Analysis.

Andere aan smrtanalysis gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: blasr
    mapping single-molecule sequencing reads
  • dep: falcon
    diploid-aware genome assembly of single-molecule sequencing reads
  • dep: kineticstools
    detection of DNA modifications
  • dep: pbalign
    map Pacific Biosciences reads to reference DNA sequences
  • dep: pbbamtools
    processing Pacific Biosciences binary alignment/map files
  • dep: pbbarcode
    annotate PacBio sequencing reads with barcode information
  • dep: pbdagcon
    sequence consensus using directed acyclic graphs
  • dep: pbgenomicconsensus
    Pacific Biosciences variant and consensus caller
  • dep: pbh5tools
    tools for manipulating Pacific Biosciences HDF5 files

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