[ Bron: sga ]
Pakket: sga (0.10.15-3)
Verwijzigingen voor sga
Trisquel bronnen:
Het bronpakket sga downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Michael R. Crusoe
- Andreas Tille
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Andere aan sga gerelateerde pakketten
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- dep: libbamtools2.4.0
- dynamic library for manipulating BAM (genome alignment) files
-
- dep: libc6 (>= 2.23)
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- dep: python-ruffus
- Python computation pipeline library widely used in bioinformatics
-
- dep: samtools
- processing sequence alignments in SAM and BAM formats
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: abyss (>= 2.0.2-1)
- Pakket niet beschikbaar