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Pakket: pbhoney (15.8.24+dfsg-2)

Verwijzigingen voor pbhoney

pbhoney

Trisquel bronnen:

Het bronpakket pbsuite downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Afif Elghraoui

Externe bronnen:

Vergelijkbare pakketten:

genomic structural variation discovery

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBHoney is part of the PBSuite.

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  • dep: python-numpy
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  • dep: python-pbbanana (= 15.8.24+dfsg-2)
    additional utilities for the pbsuite
  • dep: python-pbsuite-utils (= 15.8.24+dfsg-2)
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  • dep: python-pysam (>= 0.8.0)
    interface for the SAM/BAM sequence alignment and mapping format (Python 2)
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • rec: pbdagcon
    sequence consensus using directed acyclic graphs

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