[ Bron: murasaki ]
Pakket: murasaki-mpi (1.68.6-6build5)
Verwijzigingen voor murasaki-mpi
Trisquel bronnen:
Het bronpakket murasaki downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Andreas Tille
Externe bronnen:
- Homepage [murasaki.dna.bio.keio.ac.jp]
Vergelijkbare pakketten:
homology detection tool across multiple large genomes (MPI-version)
Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.
Murasaki is an anchor alignment software, which is
* exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 52 wall minutes)) * scalable (Arbitrarily parallelizable across multiple nodes using MPI. Even a single node with 16GB of ram can handle over 1Gbp of sequence.) * unlimited pattern length * repeat tolerant * intelligent noise reduction
This package provides the MPI-enabled binary for murasaki. While this will speed up operation on multi-processor machines it will slow down on a single processor.
Andere aan murasaki-mpi gerelateerde pakketten
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- dep: libboost-filesystem1.65.1
- filesystem operations (portable paths, iteration over directories, etc) in C++
-
- dep: libboost-iostreams1.65.1
- Boost.Iostreams Library
-
- dep: libboost-regex1.65.1
- regular expression library for C++
-
- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libopenmpi2
- high performance message passing library -- shared library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: murasaki-common
- homology detection tool across multiple large genomes (common files)