[ Bron: miniasm ]
Pakket: miniasm (0.2+dfsg-2)
Verwijzigingen voor miniasm
Trisquel bronnen:
Het bronpakket miniasm downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Sascha Steinbiss
Externe bronnen:
- Homepage [github.com]
Vergelijkbare pakketten:
ultrafast de novo assembler for long noisy DNA sequencing reads
Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Andere aan miniasm gerelateerde pakketten
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: minimap
- tool for approximate mapping of long biosequences such as DNA reads