[ Bron: mapsembler2 ]
Pakket: mapsembler2 (2.2.4+dfsg-1)
Verwijzigingen voor mapsembler2
Trisquel bronnen:
Het bronpakket mapsembler2 downloaden:
- [mapsembler2_2.2.4+dfsg-1.dsc]
- [mapsembler2_2.2.4+dfsg.orig.tar.xz]
- [mapsembler2_2.2.4+dfsg-1.debian.tar.xz]
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Olivier Sallou
- Andreas Tille
Externe bronnen:
- Homepage [colibread.inria.fr]
Vergelijkbare pakketten:
bioinformatics targeted assembly software
Mapsembler2 is a targeted assembly software. It takes as input a set of NGS raw reads (fasta or fastq, gzipped or not) and a set of input sequences (starters).
It first determines if each starter is read-coherent, e.g. whether reads confirm the presence of each starter in the original sequence. Then for each read-coherent starter, Mapsembler2 outputs its sequence neighborhood as a linear sequence or as a graph, depending on the user choice.
Mapsembler2 may be used for (not limited to):
- Validate an assembled sequence (input as starter), e.g. from a de Bruijn graph assembly where read-coherence was not enforced. - Checks if a gene (input as starter) has an homolog in a set of reads - Checks if a known enzyme is present in a metagenomic NGS read set. - Enrich unmappable reads by extending them, possibly making them mappable - Checks what happens at the extremities of a contig - Remove contaminants or symbiont reads from a read set
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