[ Bron: last-align ]
Pakket: last-align (921-1)
Verwijzigingen voor last-align
Trisquel bronnen:
Het bronpakket last-align downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Charles Plessy
- Andreas Tille
Externe bronnen:
- Homepage [last.cbrc.jp]
Vergelijkbare pakketten:
genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or protein sequences. LAST is similar to BLAST, but it copes better with very large amounts of sequence data. Here are two things LAST is good at:
* Comparing large (e.g. mammalian) genomes. * Mapping lots of sequence tags onto a genome.
The main technical innovation is that LAST finds initial matches based on their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers). This allows one to map tags to genomes without repeat-masking, without becoming overwhelmed by repetitive hits. To find these variable-sized matches, it uses a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a discontiguous suffix array, analogous to spaced seeds.
Andere aan last-align gerelateerde pakketten
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: parallel
- build and execute command lines from standard input in parallel
-
- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
-
- rec: python
- interactive high-level object-oriented language (default version)
-
- rec: python-pil
- Python Imaging Library (Pillow fork)