[ Bron: canu ]
Pakket: canu (1.6+dfsg-2)
Verwijzigingen voor canu
Trisquel bronnen:
Het bronpakket canu downloaden:
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Afif Elghraoui
Externe bronnen:
- Homepage [canu.readthedocs.org]
Vergelijkbare pakketten:
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
Andere aan canu gerelateerde pakketten
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
Ook een virtueel pakket geboden door: libc6-udeb
-
- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
-
- dep: libgcc1 (>= 1:3.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: mhap (>= 2.1)
- locality-sensitive hashing to detect long-read overlaps
-
- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- rec: gnuplot
- Command-line driven interactive plotting program.
Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11
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- sug: nanopolish
- consensus caller for nanopore sequencing data
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- sug: pbgenomicconsensus
- Pacific Biosciences variant and consensus caller