[ Bron: picard-tools ]
Pakket: picard-tools (2.8.1+dfsg-3)
Verwijzigingen voor picard-tools
Trisquel bronnen:
Het bronpakket picard-tools downloaden:
- [picard-tools_2.8.1+dfsg-3.dsc]
- [picard-tools_2.8.1+dfsg.orig.tar.xz]
- [picard-tools_2.8.1+dfsg-3.debian.tar.xz]
Beheerder:
Original Maintainers:
- Debian Med Packaging Team (Mailarchief)
- Charles Plessy
- Olivier Sallou
- Vincent Danjean
- Andreas Tille
- Steffen Moeller
Externe bronnen:
- Homepage [broadinstitute.github.io]
Vergelijkbare pakketten:
Command line tools to manipulate SAM and BAM files
SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Picard Tools includes these utilities to manipulate SAM and BAM files:
AddCommentsToBam FifoBuffer AddOrReplaceReadGroups FilterSamReads BaitDesigner FilterVcf BamIndexStats FixMateInformation BamToBfq GatherBamFiles BedToIntervalList GatherVcfs BuildBamIndex GenotypeConcordance CalculateHsMetrics IlluminaBasecallsToFastq CalculateReadGroupChecksum IlluminaBasecallsToSam CheckIlluminaDirectory LiftOverIntervalList CheckTerminatorBlock LiftoverVcf CleanSam MakeSitesOnlyVcf CollectAlignmentSummaryMetrics MarkDuplicates CollectBaseDistributionByCycle MarkDuplicatesWithMateCigar CollectGcBiasMetrics MarkIlluminaAdapters CollectHiSeqXPfFailMetrics MeanQualityByCycle CollectIlluminaBasecallingMetrics MergeBamAlignment CollectIlluminaLaneMetrics MergeSamFiles CollectInsertSizeMetrics MergeVcfs CollectJumpingLibraryMetrics NormalizeFasta CollectMultipleMetrics PositionBasedDownsampleSam CollectOxoGMetrics QualityScoreDistribution CollectQualityYieldMetrics RenameSampleInVcf CollectRawWgsMetrics ReorderSam CollectRnaSeqMetrics ReplaceSamHeader CollectRrbsMetrics RevertOriginalBaseQualitiesAndAddMateCigar CollectSequencingArtifactMetrics RevertSam CollectTargetedPcrMetrics SamFormatConverter CollectVariantCallingMetrics SamToFastq CollectWgsMetrics ScatterIntervalsByNs CompareMetrics SortSam CompareSAMs SortVcf ConvertSequencingArtifactToOxoG SplitSamByLibrary CreateSequenceDictionary SplitVcfs DownsampleSam UpdateVcfSequenceDictionary EstimateLibraryComplexity ValidateSamFile ExtractIlluminaBarcodes VcfFormatConverter ExtractSequences VcfToIntervalList FastqToSam ViewSam
Andere aan picard-tools gerelateerde pakketten
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- dep: default-jre
- Standard Java or Java compatible Runtime
- of java6-runtime
- virtueel pakket geboden door default-jre, openjdk-11-jre, openjdk-8-jre
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- dep: libpicard-java (= 2.8.1+dfsg-3)
- Java library to manipulate SAM and BAM files