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Pakket: kraken (1.1.1-3)

Verwijzigingen voor kraken

kraken

Trisquel bronnen:

Het bronpakket kraken downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Andreas Tille

Externe bronnen:

Vergelijkbare pakketten:

assigning taxonomic labels to short DNA sequences

Kraken is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies. Previous attempts by other bioinformatics software to accomplish this task have often used sequence alignment or machine learning techniques that were quite slow, leading to the development of less sensitive but much faster abundance estimation programs. Kraken aims to achieve high sensitivity and high speed by utilizing exact alignments of k-mers and a novel classification algorithm.

In its fastest mode of operation, for a simulated metagenome of 100 bp reads, Kraken processed over 4 million reads per minute on a single core, over 900 times faster than Megablast and over 11 times faster than the abundance estimation program MetaPhlAn. Kraken's accuracy is comparable with Megablast, with slightly lower sensitivity and very high precision.

Andere aan kraken gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: jellyfish1
    count k-mers in DNA sequences
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [niet armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

kraken downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 742,8 kB1462 kB [overzicht]
arm64 739,3 kB1422 kB [overzicht]
armhf 745,5 kB1416 kB [overzicht]
ppc64el 744,2 kB1706 kB [overzicht]