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Pakket: nanopolish (0.13.3-2)

Verwijzigingen voor nanopolish

nanopolish

Trisquel bronnen:

Het bronpakket nanopolish downloaden:

Beheerder:

Original Maintainers:

  • Debian Med Packaging Team (Mailarchief)
  • Andreas Tille

Externe bronnen:

Vergelijkbare pakketten:

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andere aan nanopolish gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: libgcc-s1 (>= 3.5)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhdf5-103-1
    HDF5 C runtime files - serial version
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: python3-biopython
    Python3 library for bioinformatics
  • rec: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • sug: make
    utility for directing compilation
  • sug: perl
    Larry Wall's Practical Extraction and Report Language

nanopolish downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
armhf 2.359,0 kB9001 kB [overzicht]