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Pakket: tombo (1.5.1-3build2)

identification of modified nucleotides from raw nanopore sequencing data

Tombo is a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data. Tombo also provides tools for the analysis and visualization of raw nanopore signal.

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  • depends
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  • dep: cython3
    C-Extensions for Python 3
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    Ook een virtueel pakket geboden door: libc6-udeb
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)
  • dep: python3-h5py
    general-purpose Python interface to hdf5
  • dep: python3-h5py-serial
    general-purpose Python interface to hdf5 (Python 3 serial)
  • dep: python3-mappy
    Python3 interface minimap2
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python3-scipy
    scientific tools for Python 3
  • dep: python3-tqdm
    fast, extensible progress bar for Python 3 and CLI tool
  • rec: python3-pyfaidx
    efficient random access to fasta subsequences for Python 3
  • rec: python3-rpy2
    Python3 interface to the GNU R language and environment (version 2)
    Ook een virtueel pakket geboden door: python3-rpy2

tombo downloaden

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Platform Pakketgrootte Geïnstalleerde grootte Bestanden
amd64 430,6 kB1426 kB [overzicht]