Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> stringtie
nabia  ] [  aramo  ]
[ Source: stringtie  ]

Package: stringtie (2.1.1+ds-2)

assemble short RNAseq reads to transcripts

The abundance of transcripts in a human tissue sample can be determined by RNA sequencing. The exact sequence sampled may be random, depending on the technology used. And it may be short, i.e. shorter than the transcript. At some point, many shorter reads need to be assembled to the model the complete transcripts.

StringTie knows how to assemble of RNA-Seq into potential transcripts without the need of a reference genome and provides a quantification also of the splice variants.

Other Packages Related to stringtie

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [armhf]
  • dep: libgcc-s1 (>= 3.4) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

Download stringtie

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 396.2 kB1047 kB [list of files]
armhf 344.8 kB674 kB [list of files]