[ nabia ]
[ aramo ]
[ Source: spaln ]
Package: spaln (2.4.0+dfsg-2build1)
Links for spaln
Trisquel Resources:
Download Source Package spaln:
- [spaln_2.4.0+dfsg-2build1.dsc]
- [spaln_2.4.0+dfsg.orig.tar.xz]
- [spaln_2.4.0+dfsg-2build1.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
External Resources:
- Homepage [www.genome.ist.i.kyoto-u.ac.jp]
Similar packages:
splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that maps and aligns a set of cDNA or protein sequences onto a whole genomic sequence in a single job. It also performs spliced or ordinary alignment after rapid similarity search against a protein sequence database, if a genomic segment or an amino acid sequence is given as a query.
spaln supports a combination of protein sequence database and a given genomic segment and performs rapid similarity searches and (semi-)global alignments of a set of protein sequence queries against a protein sequence database. Spaln adopts multi-phase heuristics that makes it possible to perform the job on a conventional personal computer.
Other Packages Related to spaln
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1) [amd64]
- GCC support library
- dep: libgcc-s1 (>= 3.5) [armhf]
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- dep: libstdc++6 (>= 5)
- GNU Standard C++ Library v3
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- dep: spaln-data
- splicing-aware transcript-alignment to genomic DNA (data)
Download spaln
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 312.7 kB | 763 kB | [list of files] |
| armhf | 279.2 kB | 529 kB | [list of files] |