Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> sniffles
etiona  ] [  nabia  ] [  aramo  ]
[ Source: sniffles  ]

Package: sniffles (1.0.11+ds-1build1)

structural variation caller using third-generation sequencing

Sniffles is a structural variation (SV) caller using third-generation sequencing data such as those from Pacific Biosciences or Oxford Nanopore platforms. It detects all types of SVs using evidence from split-read alignments, high-mismatch regions, and coverage analysis.

Other Packages Related to sniffles

  • depends
  • recommends
  • suggests
  • dep: libbamtools2.5.1 (>= 2.5.1+dfsg)
    dynamic library for manipulating BAM (genome alignment) files
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • sug: bwa
    Burrows-Wheeler Aligner

Download sniffles

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 196.0 kB665 kB [list of files]
armhf 173.8 kB400 kB [list of files]