Package: rna-star (2.7.3a+dfsg-1build2)
Links for rna-star
Trisquel Resources:
Download Source Package rna-star:
- [rna-star_2.7.3a+dfsg-1build2.dsc]
- [rna-star_2.7.3a+dfsg.orig.tar.xz]
- [rna-star_2.7.3a+dfsg-1build2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Andreas Tille
- Sascha Steinbiss
External Resources:
- Homepage [github.com]
Similar packages:
ultrafast universal RNA-seq aligner
Spliced Transcripts Alignment to a Reference (STAR) software based on a previously undescribed RNA-seq alignment algorithm that uses sequential maximum mappable seed search in uncompressed suffix arrays followed by seed clustering and stitching procedure. STAR outperforms other aligners by a factor of >50 in mapping speed, aligning to the human genome 550 million 2 × 76 bp paired-end reads per hour on a modest 12-core server, while at the same time improving alignment sensitivity and precision. In addition to unbiased de novo detection of canonical junctions, STAR can discover non-canonical splices and chimeric (fusion) transcripts, and is also capable of mapping full-length RNA sequences. Using Roche 454 sequencing of reverse transcription polymerase chain reaction amplicons, the authors experimentally validated 1960 novel intergenic splice junctions with an 80-90% success rate, corroborating the high precision of the STAR mapping strategy.
Other Packages Related to rna-star
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- dep: libc6 (>= 2.29)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.3.1)
- GCC support library
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- dep: libgomp1 (>= 6)
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Download rna-star
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 484.8 kB | 1161 kB | [list of files] |