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Package: nanopolish (0.11.3-1build1)

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Other Packages Related to nanopolish

  • depends
  • recommends
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  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1)
    GCC support library
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libhdf5-103
    Hierarchical Data Format 5 (HDF5) - runtime files - serial version
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: python3-biopython
    Python3 library for bioinformatics
  • rec: python3-pysam
    interface for the SAM/BAM sequence alignment and mapping format (Python 3)
  • sug: make
    utility for directing compilation
  • sug: perl
    Larry Wall's Practical Extraction and Report Language

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Architecture Package Size Installed Size Files
amd64 2,285.5 kB9906 kB [list of files]