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Package: libvcflib-tools (1.0.1+dfsg-3)

C++ library for parsing and manipulating VCF files (tools)

The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors.

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: 

 * an API for parsing and operating on records of genomic variation as it can
   be described by the VCF format,
 * and a collection of command-line utilities for executing complex
   manipulations on VCF files.

This package contains several tools using the library.

Other Packages Related to libvcflib-tools

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.15) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.23) [armhf]
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfastahack0 (>= 0.0+git20160702.bbc645f+dfsg-5~) [amd64]
    library for indexing and sequence extraction from FASTA files (lib)
    dep: libfastahack0 (>= 1.0.0+dfsg) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libsmithwaterman0 (>= 0.0+git20160702.2610e25)
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libstdc++6 (>= 9)
    GNU Standard C++ Library v3
  • dep: libtabixpp0 (>= 1.0.0)
    C++ wrapper to tabix indexer
  • dep: libvcflib1 (>= 1.0.1+dfsg)
    C++ library for parsing and manipulating VCF files
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: r-base-core
    GNU R core of statistical computation and graphics system
  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-gridbase
    GNU R Integration of base and grid graphics
  • dep: r-cran-plyr
    tools for splitting, applying and combining data
  • sug: r-cran-pracma
    practical numerical math functions for GNU R

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amd64 620.3 kB4511 kB [list of files]
armhf 530.7 kB2621 kB [list of files]