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[ aramo ]
[ Source: kleborate ]
Package: kleborate (1.0.0-3)
Links for kleborate
Trisquel Resources:
Download Source Package kleborate:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [github.com]
Similar packages:
tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
* MLST sequence type * species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) * ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb) * virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) * antimicrobial resistance genes, including quinolone resistance SNPs and colistin resistance truncations * K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive
Other Packages Related to kleborate
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- dep: kaptive
- obtain information about K and O types for Klebsiella genome assemblies
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- dep: kaptive-data
- reference data for kaptive for Klebsiella genome assemblies
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- dep: mash
- fast genome and metagenome distance estimation using MinHash
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- dep: ncbi-blast+
- next generation suite of BLAST sequence search tools
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
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- dep: python3-distutils
- distutils package for Python 3.x
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- rec: python3-biopython
- Python3 library for bioinformatics
Download kleborate
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 4,944.3 kB | 35500 kB | [list of files] |