Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> gromacs-openmpi
[  etiona  ] [  nabia  ]
[ Source: gromacs  ]

Package: gromacs-openmpi (2020.1-1)

Molecular dynamics sim, binaries for OpenMPI parallelization

GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.

It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers.

This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines.

Other Packages Related to gromacs-openmpi

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfftw3-double3 (>= 3.3.5)
    Library for computing Fast Fourier Transforms - Double precision
  • dep: libfftw3-single3 (>= 3.3.5)
    Library for computing Fast Fourier Transforms - Single precision
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libhwloc15 (>= 2.1.0+dfsg)
    Hierarchical view of the machine - shared libs
  • dep: libopenmpi3 (>= 4.0.3)
    high performance message passing library -- shared library
  • dep: libstdc++6 (>= 5.2) [amd64]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 6) [armhf]
  • dep: neon-support [armhf]
    prevent installation on processors without required instructions
  • dep: openmpi-bin (>= 1.2.3)
    high performance message passing library -- binaries
  • dep: zlib1g (>= 1:1.2.0)
    compression library - runtime
  • rec: gromacs
    Molecular dynamics simulator, with building and analysis tools
  • sug: gromacs-data
    GROMACS molecular dynamics sim, data and documentation

Download gromacs-openmpi

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 6,661.0 kB18106 kB [list of files]
armhf 3,236.2 kB8738 kB [list of files]