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Package: gmap (2020-04-08+ds1-1)

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gmap

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spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of 

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.

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Download gmap

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 10,966.3 kB86076 kB [list of files]