Skip to content
Sections
>> Trisquel >> Packages >> nabia >> science >> deepnano
etiona  ] [  nabia  ] [  aramo  ]
[ Source: deepnano  ]

Package: deepnano (0.0+git20170813.e8a621e-3.1)

alternative basecaller for MinION reads of genomic sequences

DeepNano is alternative basecaller for Oxford Nanopore MinION reads based on deep recurrent neural networks.

Currently it works with SQK-MAP-006 and SQK-MAP-005 chemistry and as a postprocessor for Metrichor.

Other Packages Related to deepnano

  • depends
  • recommends
  • suggests
  • dep: deepnano-data
    alternative basecaller for MinION reads of genomic sequences (data)
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc1 (>= 1:3.0) [amd64]
    GCC support library (dependency package)
    dep: libgcc1 (>= 1:3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-dateutil
    powerful extensions to the standard Python 3 datetime module
  • dep: python3-h5py
    general-purpose Python interface to hdf5 (Python 3)
  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-theano
    CPU/GPU math expression compiler for Python 3
  • rec: python3-watchdog
    Python API and shell utilities to monitor file system events - Python 3.x

Download deepnano

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 20.3 kB98 kB [list of files]
armhf 19.1 kB80 kB [list of files]