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Package: ampliconnoise (1.29-8)

removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Other Packages Related to ampliconnoise

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgsl23 (>= 2.5)
    GNU Scientific Library (GSL) -- library package
  • dep: libopenmpi3
    high performance message passing library -- shared library
  • dep: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • rec: openmpi-bin
    high performance message passing library -- binaries

Download ampliconnoise

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 462.6 kB1431 kB [list of files]
armhf 443.3 kB1214 kB [list of files]