Package: python3-dna-jellyfish (2.3.0-4build1)
Links for python3-dna-jellyfish
Trisquel Resources:
Download Source Package jellyfish:
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
External Resources:
- Homepage [www.cbcb.umd.edu]
Similar packages:
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Other Packages Related to python3-dna-jellyfish
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.9)
- dep: python3 (>= 3.8~)
Download python3-dna-jellyfish
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 53.5 kB | 187 kB | [list of files] |