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Package: r-cran-seurat (3.1.3-1)

Tools for Single Cell Genomics

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details.

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  • dep: libc6 (>= 2.29)
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    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
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    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    virtual package provided by r-base-core
  • dep: r-base-core (>= 3.6.2-2build1)
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  • dep: r-cran-ape
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  • dep: r-cran-cluster
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  • dep: r-cran-cowplot
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  • dep: r-cran-fitdistrplus
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  • dep: r-cran-future
    R package: A Future API for R
  • dep: r-cran-future.apply
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  • dep: r-cran-ggplot2 (>= 3.0.0)
    implementation of the Grammar of Graphics
  • dep: r-cran-ggrepel
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  • dep: r-cran-ggridges
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  • dep: r-cran-httr
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  • dep: r-cran-ica
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  • dep: r-cran-igraph
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  • dep: r-cran-irlba
    GNU R fast truncated SVD, PCA and symmetric eigendecomposition
  • dep: r-cran-kernsmooth
    GNU R package for kernel smoothing and density estimation
  • dep: r-cran-leiden (>= 0.3.1)
    GNU R implementation of Leiden clustering algorithm
  • dep: r-cran-lmtest
    GNU R package for diagnostic checking in linear models
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-matrix (>= 1.2-14)
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  • dep: r-cran-metap
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  • dep: r-cran-pbapply
    GNU R package providing progress bars for vectorized R functions
  • dep: r-cran-plotly
    create interactive web graphics via 'plotly.js' in GNU R
  • dep: r-cran-png
    GNU R package to read and write PNG images
  • dep: r-cran-rann
    Fast Nearest Neighbour Search Using L2 Metric
  • dep: r-cran-rcolorbrewer
    GNU R package providing suitable color palettes
  • dep: r-cran-rcpp (>= 0.11.0)
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  • dep: r-cran-rcppannoy
    Rcpp bindings for Annoy (approximate nearest neighbors)
  • dep: r-cran-rcppeigen
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  • dep: r-cran-rlang
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  • dep: r-cran-rsvd
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  • dep: r-cran-rtsne
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Architecture Package Size Installed Size Files
amd64 1,929.1 kB2402 kB [list of files]
armhf 1,903.4 kB2257 kB [list of files]