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Package: r-cran-sctransform (0.2.1-1build1)

Variance Stabilizing Transformations for Single Cell UMI Data

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

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  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libgcc-s1 (>= 3.0) [amd64]
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    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    virtual package provided by r-base-core
  • dep: r-base-core (>= 3.6.2.20200221-1build1)
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  • dep: r-cran-future.apply
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  • dep: r-cran-ggplot2
    implementation of the Grammar of Graphics
  • dep: r-cran-gridextra
    GNU R package with extensions for the grid package
  • dep: r-cran-mass
    GNU R package of Venables and Ripley's MASS
  • dep: r-cran-matrix
    GNU R package of classes for dense and sparse matrices
  • dep: r-cran-rcpp (>= 0.11.0)
    GNU R package for Seamless R and C++ Integration
  • dep: r-cran-rcppeigen
    GNU R package for Eigen templated linear algebra
  • dep: r-cran-reshape2
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  • sug: r-cran-irlba
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  • sug: r-cran-knitr
    GNU R package for dynamic report generation using Literate Programming

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Architecture Package Size Installed Size Files
amd64 294.2 kB397 kB [list of files]
armhf 291.1 kB365 kB [list of files]