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Package: canu (1.9+dfsg-1build1)

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps: 

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

  • depends
  • recommends
  • suggests
  • dep: gnuplot
    Command-line driven interactive plotting program.
    also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libfilesys-df-perl
    Module to obtain filesystem disk space information
  • dep: libgcc-s1 (>= 3.0) [amd64]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 6)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: mhap (>= 2.1.3)
    locality-sensitive hashing to detect long-read overlaps
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • sug: nanopolish
    consensus caller for nanopore sequencing data
  • sug: pbgenomicconsensus
    Package not available

Download canu

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,325.5 kB9691 kB [list of files]
armhf 1,211.7 kB6847 kB [list of files]